User's Manual for SEE V4
About 3D 4D Hotkeys Cmds-I Cmds-II HNCA-NOE Deposit
(All the commands should be executed in NMRView Console)
For 3D NOE Assignment:
hsqcdsp ?ResidueNumber?
Use this command to display backbone H & N slice in the first 3D 15N-edited
NOESY spectrum according to residue number.
For example, 'hsqcdsp 50'
hsqcdsp2 ?ResidueNumber?
Use this command to display backbone H & N slice in the second 3D 15N-edited
NOESY spectrum
hsqcdsp3 ?ResidueNumber? ?AtomNameofN? ?AtomNameofHN?
Use this command to display H & N slice in the first 3D 13N-edited
NOESY spectrum.
For example, 'hsqcdsp3 15 ne1 he1'
chsqcdsp ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the first 3D 13C-edited
NOESY spectrum.
For example, 'chsqcdsp 15 ca ha'
chsqcdsp2 ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the second 3D 13C-edited
NOESY spectrum.
For example, 'chsqcdsp2 15 ca ha'
set Htol ?Value?
Set 1H tolerance for 3D NOE assignment.
For example, 'set Htol 0.2'
set Ntol ?Value?
Set 15N tolerance for 3D NOE assignment
set Ctol ?Value?
Set 13C tolerance for 3D NOE assignment
puts $Htol
Check 1H tolerance for 3D NOE assignment
puts $Ntol
Check 15N tolerance for 3D NOE assignment
puts $Ctol
Check 13C tolerance for 3D NOE assignment
For 4D NOE Assignment:
set 4DHtol ?Value?
Set 1H tolerance for 4D NOE assignment, for example, 'set 4DHtol 0.3'
set 4DNtol ?Value?
Set 15N tolerance for 4D NOE assignment
set 4DCtol ?Value?
Set 13C tolerance for 4D NOE assignment
puts $4DHtol
Check 1H tolerance for 4D NOE assignment
puts $4DNtol
Check 15N tolerance for 4D NOE assignment
puts $4DCtol
Check 13C tolerance for 4D NOE assignment
4dncdsp ?ResidueNumber?
Use this command to display backbone H & N slice in the 4D 1H-15N-13C-1H
NOESY spectrum according to residue number.
For example, '4dncdsp 50'
4dncdsp3 ?ResidueNumber? ?AtomNameofN? ?AtomNameofH?
Use this command to display H/N slice in the 4D 1H-15N-13C-1H NOESY spectrum according to your assignments.
For example, '4dncdsp3 15 ne1 he1'
4dccdsp ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the 4D 1H-13C-13C-1H
NOESY spectrum. For example, '4dccdsp 15 ca ha'
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