User's Manual for SEE V4

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(All the commands should be executed in NMRView Console)

For 3D NOE Assignment:

hsqcdsp ?ResidueNumber?
Use this command to display backbone H & N slice in the first 3D 15N-edited NOESY spectrum according to residue number.
For example, 'hsqcdsp 50'

hsqcdsp2 ?ResidueNumber?
Use this command to display backbone H & N slice in the second 3D 15N-edited NOESY spectrum

hsqcdsp3 ?ResidueNumber? ?AtomNameofN? ?AtomNameofHN?
Use this command to display H & N slice in the first 3D 13N-edited NOESY spectrum.
For example, 'hsqcdsp3 15 ne1 he1'

chsqcdsp ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the first 3D 13C-edited NOESY spectrum.
For example, 'chsqcdsp 15 ca ha'

chsqcdsp2 ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the second 3D 13C-edited NOESY spectrum.
For example, 'chsqcdsp2 15 ca ha'

set Htol ?Value?
Set 1H tolerance for 3D NOE assignment.
For example, 'set Htol 0.2'

set Ntol ?Value?
Set 15N tolerance for 3D NOE assignment

set Ctol ?Value?
Set 13C tolerance for 3D NOE assignment

puts $Htol
Check 1H tolerance for 3D NOE assignment

puts $Ntol
Check 15N tolerance for 3D NOE assignment

puts $Ctol
Check 13C tolerance for 3D NOE assignment

For 4D NOE Assignment:

set 4DHtol ?Value?
Set 1H tolerance for 4D NOE assignment, for example, 'set 4DHtol 0.3'

set 4DNtol ?Value?
Set 15N tolerance for 4D NOE assignment

set 4DCtol ?Value?
Set 13C tolerance for 4D NOE assignment

puts $4DHtol
Check 1H tolerance for 4D NOE assignment

puts $4DNtol
Check 15N tolerance for 4D NOE assignment

puts $4DCtol
Check 13C tolerance for 4D NOE assignment

4dncdsp ?ResidueNumber?
Use this command to display backbone H & N slice in the 4D 1H-15N-13C-1H NOESY spectrum according to residue number.
For example, '4dncdsp 50'

4dncdsp3 ?ResidueNumber? ?AtomNameofN? ?AtomNameofH?
Use this command to display H/N slice in the 4D 1H-15N-13C-1H NOESY spectrum according to your assignments.
For example, '4dncdsp3 15 ne1 he1'

4dccdsp ?ResidueNumber? ?AtomNameofC? ?AtomNameofH?
Use this command to display H & C slice in the 4D 1H-13C-13C-1H NOESY spectrum. For example, '4dccdsp 15 ca ha'

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