User's Manual for SEE V4

About   3D   4D   Hotkeys   Cmds-I   Cmds-II   HNCA-NOE   Deposit

Before you start this program, please make sure that:

  1. You have finished or nearly completely finished the backbone and sidechain assignments;
  2. You have already opened and drawn the necessary datasets. H from indirect dimension(HC2) and its associated C(C2) should be displayed in axis X and Y, respectively. Also, you should load their PeakLists as well as chemical shift assignments into the NMRVIEW

Setting your preferences

Dataset: Select the proper datasets. Alternatively, you can manually key in the  dataset name. If you don't have one of those spectrums, please select or key in "NONE".

Dimension: It is similar to that in NMRView Attributes of spectrum window. You are only allowed to choose its attribute. "H" in 2D experiment or "HN/HC1" in 4D experiment corresponds to direct dimension (F1). "H2", proton indirect dimension. Please open the NMRView Attribute window to check them.

2nd Dataset and Break: In case that you have to break your 4D spectrum into 2 parts due to the small memory, please select this dataset. It should contain the same dimenstion setting as the first one.

After setting all the parameters, click OK and you can assign 4D NOE crosspeaks by double-click them

[NOTE]: If you save the preferences into a file with a default name, "4d.input", in current working folder, all the parameters will be automatically read when you open this window next time.

Please refer to the "Hotkeys" and "Commands" for more details

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